FastQCFastQC Report
Sat 31 Dec 2022
SRR1954563.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954563.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences574009
Sequences flagged as poor quality0
Sequence length51
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT28130.4900620025121557No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACTACAGGTCGTATGCCG15180.26445578379433077No Hit
GAATCTGTCTCTTATACACATCTGACGCACTACAGGTCGTATGCCGTCTTC10480.1825755345299464No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCACTACAGGTCGTATGC9570.16672212456599111No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT6040.10522483096954925No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)