FastQCFastQC Report
Sat 31 Dec 2022
SRR1954561.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954561.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences570885
Sequences flagged as poor quality0
Sequence length51
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT58871.0312059346453315No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGCTTCAGTTCGTATGCCG36320.6362051901871655No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCTTCAGTTCGTATGC27140.4754022263678324No Hit
GAATCTGTCTCTTATACACATCTGACGCGCTTCAGTTCGTATGCCGTCTTC20980.36749958397926025No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC13990.24505811152859155No Hit
GCTGTCTCTTATACACATCTGACGCGCTTCAGTTCGTATGCCGTCTTCTGC7690.13470313635846098Illumina Single End Adapter 2 (95% over 21bp)
GAATGATACGGCGACCACCGATGAATGATACGGCGACCACCGATCGAATGC5890.10317314345270939No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)