FastQCFastQC Report
Sat 31 Dec 2022
SRR1954560.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954560.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences595188
Sequences flagged as poor quality0
Sequence length51
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT60961.0242141978668926No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGAGCAATCTCGTATGCCG15600.2621020585092442No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGAGCAATCTCGTATGC10030.1685181824902384No Hit
GAATCTGTCTCTTATACACATCTGACGCGAGCAATCTCGTATGCCGTCTTC9170.15406896644421594RNA PCR Primer, Index 4 (95% over 23bp)
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC6390.10736103550474808No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)