FastQCFastQC Report
Sat 31 Dec 2022
SRR1954542.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954542.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences368959
Sequences flagged as poor quality0
Sequence length51
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT55691.509381801229947No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGAATCCGATCGTATGCCG10280.27862174387940125No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGAATCCGATCGTATGC7590.205713914012126No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC7050.19107814147371388No Hit
GAATCTGTCTCTTATACACATCTGACGCGAATCCGATCGTATGCCGTCTTC5440.1474418566832629No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)