FastQCFastQC Report
Sat 31 Dec 2022
SRR1954535.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954535.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1792032
Sequences flagged as poor quality0
Sequence length51
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT266741.488477884323494No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCG48070.2682429778039678No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC35850.20005223121015697No Hit
GAATCTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCGTCTTC30600.17075587935929715No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGC27980.15613560472134427No Hit
GCTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCGTCTTCTGC24140.1347074159390011No Hit
CCTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCGTCTTCTGC19170.1069735361868538No Hit
CTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCGTCTTCTGCT18280.10200710701594613No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)