FastQCFastQC Report
Sat 31 Dec 2022
SRR1954501.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954501.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences169131
Sequences flagged as poor quality0
Sequence length51
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT20041.1848803590116537No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCG3520.2081226977904701No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC3290.19452377151438827No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGC2790.16496088830551467No Hit
GAATCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTTC2570.15195321969361028No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)