FastQCFastQC Report
Sat 31 Dec 2022
SRR1954498.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954498.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences376136
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT39101.0395176212859178No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGACAGAGTCGTATGCCG18490.4915775145160261No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGACAGAGTCGTATGC13990.37193993661866986No Hit
GAATCTGTCTCTTATACACATCTGACGCAGACAGAGTCGTATGCCGTCTTC9780.26001233596358764No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC7990.2124231660888615No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)