FastQCFastQC Report
Sat 31 Dec 2022
SRR1954486.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954486.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences223591
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT22150.9906481030095129No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC6500.29070937560098575No Hit
ATGTTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA2340.10465537521635486No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)