FastQCFastQC Report
Sat 31 Dec 2022
SRR1954450.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954450.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences260848
Sequences flagged as poor quality0
Sequence length51
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT23650.9066582837514569No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC6180.23691958535238916No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCG4090.15679629516039992No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT3910.14989572471324294No Hit
GAATCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTTC3040.11654296755198429No Hit
TGAATGATACCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCC2990.11462614242777402No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGC2980.11424277740293197No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)