FastQCFastQC Report
Sat 31 Dec 2022
SRR1954441.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954441.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences275785
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT20520.7440578711677576No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCG10360.37565494860126547No Hit
GAATCTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCGTCTTC7340.2661493554761861No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGC6780.24584368257882047No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC6360.23061442790579617No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)