FastQCFastQC Report
Sat 31 Dec 2022
SRR1954420.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954420.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences225772
Sequences flagged as poor quality0
Sequence length51
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT15240.6750172740641001No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCG8840.3915454529348192No Hit
GAATCTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCTTC7220.31979164821146994No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGC5670.2511383165317223No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC4500.19931612423152562No Hit
GAATGCTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCTT2440.10807363180553833No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)