FastQCFastQC Report
Sat 31 Dec 2022
SRR1954417.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954417.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences222624
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAATGATACCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCG39681.7823774615495183No Hit
GAATCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCTTC30721.379905131522208No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGC23821.0699655023717118No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT17850.8018003449762828No Hit
GAACTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCTTCT8550.3840556274256145No Hit
GAATGACTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCT6740.3027526232571511No Hit
GCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCTTCTGC6510.29242130228546787No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC5910.26547003018542475No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTC5890.26457165444875663No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTA5360.24076469742705187No Hit
GAATCTATCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCTTC3610.16215682046859278No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTTGTCCCTT3480.15631737818025013No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCG2830.12712016673853674No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGT2460.1105002156101768No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)