FastQCFastQC Report
Sat 31 Dec 2022
SRR1954411.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954411.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences742955
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAATCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCTTC98871.3307670047311075No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCG88131.1862091243749622No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT60180.8100086815486806No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGC55920.7526700809604888No Hit
GAACTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCTTCT34620.46597707801953014No Hit
GCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCTTCTGC18260.24577531613623974No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTC17560.23635348035883735No Hit
GAATGACTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCT15010.20203107859830005No Hit
GAATGCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCTT11770.1584214387143232No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCATTCTCGTCGTA11310.1522299466320302No Hit
GAATCTATCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCTTC8900.11979191202697335No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)