FastQCFastQC Report
Sat 31 Dec 2022
SRR1954410.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954410.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences398293
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAATGATACCTGTCTCTTATACACATCTGACGCACGATCTGTCGTATGCCG37490.9412668563093No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT36810.9241939978859784No Hit
GAATCTGTCTCTTATACACATCTGACGCACGATCTGTCGTATGCCGTCTTC25360.6367171906109321No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCACGATCTGTCGTATGC24120.6055843311331106No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC8850.22219823095058158No Hit
GAACTGTCTCTTATACACATCTGACGCACGATCTGTCGTATGCCGTCTTCT7570.19006108568315286No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT7560.18981001423575108No Hit
GAATGATCTGTCTCTTATACACATCTGACGCACGATCTGTCGTATGCCGTC6390.16043465488974196No Hit
GAATGACTGTCTCTTATACACATCTGACGCACGATCTGTCGTATGCCGTCT6260.15717072607351876No Hit
GCTGTCTCTTATACACATCTGACGCACGATCTGTCGTATGCCGTCTTCTGC6000.15064286844107228No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCACGATCTGTCGTA5250.13181250988593823No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)