SRR1954409.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1954409.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	306936
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCCATAACCCTCGTATGCCG	2082	0.6783173039330676	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1996	0.6502984335496651	No Hit
GAATCTGTCTCTTATACACATCTGACGCCATAACCCTCGTATGCCGTCTTC	1548	0.5043396669012432	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCATAACCCTCGTATGC	1397	0.4551437433210832	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1288	0.4196314541142127	No Hit
GAACTGTCTCTTATACACATCTGACGCCATAACCCTCGTATGCCGTCTTCT	419	0.1365105429144838	No Hit
GCTGTCTCTTATACACATCTGACGCCATAACCCTCGTATGCCGTCTTCTGC	346	0.11272708317043292	TruSeq Adapter, Index 13 (95% over 23bp)
GAATGACTGTCTCTTATACACATCTGACGCCATAACCCTCGTATGCCGTCT	339	0.11044647744155134	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCATAACCCTCGTATGCCGTC	339	0.11044647744155134	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATTTCG	35	1.2080454E-7	45.000004	12
ACCGCAG	25	3.884101E-5	45.000004	1
ATGTCGG	25	3.884101E-5	45.000004	2
AACGGAG	25	3.884101E-5	45.000004	2
CGGGAAC	35	1.2080454E-7	45.000004	6
TAGTGCG	25	3.884101E-5	45.000004	1
TTCGCTC	35	1.2080454E-7	45.000004	15
AGATGCG	25	3.884101E-5	45.000004	25
GTTTGCG	20	7.025198E-4	45.0	1
CGGAATA	20	7.025198E-4	45.0	17
CCGGGCT	20	7.025198E-4	45.0	5
TAGAATA	20	7.025198E-4	45.0	18
TTGTACG	20	7.025198E-4	45.0	1
TAAGTGT	20	7.025198E-4	45.0	16
AAGCGCG	20	7.025198E-4	45.0	1
ATCACGC	20	7.025198E-4	45.0	40
TGCATCG	20	7.025198E-4	45.0	24
TGGCACA	20	7.025198E-4	45.0	36
CCCGTAG	20	7.025198E-4	45.0	27
GCCGAGT	20	7.025198E-4	45.0	9