FastQCFastQC Report
Sat 31 Dec 2022
SRR1954407.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954407.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences412293
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT43021.0434327044116685No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGCCG15930.38637570853737513No Hit
GAATCTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGCCGTCTTC11090.26898346564215253No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCACATCCGTTCGTATGC10290.2495797891305455No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC6030.14625521170623804No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)