FastQCFastQC Report
Sat 31 Dec 2022
SRR1954405.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954405.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences429359
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT36590.8522006060196713No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGCCG28360.6605195186312619No Hit
GAATCTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGCCGTCTTC21020.4895670056991934No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGC18610.4334368209353944No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC10870.25316809476452107No Hit
GAACTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGCCGTCTTCT6480.15092265446863812No Hit
GCTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGCCGTCTTCTGC5310.12367273074513402No Hit
GAATGACTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGCCGTCT5010.11668557081603041No Hit
GGAACTGGGAATTAAAGATTATTATACTTCACTGTATATAAACAGATTTTT4990.11621976015409018No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGCCGTC4860.1131919908514786No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT4800.11179455886565787No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)