FastQCFastQC Report
Sat 31 Dec 2022
SRR1954396.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954396.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences205429
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAATGATACCTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTATGCCG40561.9744047821875197No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTATGC32961.604447278621811No Hit
GAATCTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTATGCCGTCTTC30351.477396083318324No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT18280.8898451533133102No Hit
GAACTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTATGCCGTCTTCT8560.41668897770032465No Hit
GAATGACTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTATGCCGTCT7060.3436710493649874No Hit
GCTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTATGCCGTCTTCTGC6720.327120318942311No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTATGCCGTC5720.2784417000520861No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGTGGTTCTT5550.2701663348407479No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTA5180.25215524585136473No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC4950.24095916350661298No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT3360.1635601594711555No Hit
GAATCTATCTCTTATACACATCTGACGCGTGGTTCTTCGTATGCCGTCTTC2420.11780225771434412No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTATGCCG2390.11634189914763739No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCGTGGTTCTTCGT2370.1153683267698329No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)