FastQCFastQC Report
Sat 31 Dec 2022
SRR1954394.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954394.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences551102
Sequences flagged as poor quality0
Sequence length51
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT41240.7483188230127998No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGCCTATAGTCGTATGCCG32890.5968042213601112No Hit
GAATCTGTCTCTTATACACATCTGACGCGCCTATAGTCGTATGCCGTCTTC30290.5496260220431063No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCCTATAGTCGTATGC21480.38976450820356306No Hit
GAACTGTCTCTTATACACATCTGACGCGCCTATAGTCGTATGCCGTCTTCT9850.17873279356634525No Hit
GGGCTTAACTTTCTCATGAATTTGCCTGAGGTTTCCAAACCCTTCACATTT7910.14353059869134935No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGCCTATAGTCGTATGCCGTC6140.1114131322332345No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)