FastQCFastQC Report
Sat 31 Dec 2022
SRR1954392.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954392.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences259834
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT26751.0295034522040996No Hit
GAATCTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCGTCTTC18900.7273874858563545No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCG17020.6550335983743467No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGC13800.5311083230062271No Hit
GAACTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCGTCTTCT5720.22014055127504484No Hit
GCTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCGTCTTCTGC5560.21398277361700163No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC5170.1989731905755213No Hit
GAATGACTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCGTCT3690.1420137472386216No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCGTC3000.11545833108831023No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGGTAGGAATCGTA2640.10160333135771299No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)