FastQCFastQC Report
Sat 31 Dec 2022
SRR1954390.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954390.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences372670
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAATGATACCTGTCTCTTATACACATCTGACGCAATAGGGGTCGTATGCCG72551.9467625513188611No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAATAGGGGTCGTATGC54781.469933184855234No Hit
GAATCTGTCTCTTATACACATCTGACGCAATAGGGGTCGTATGCCGTCTTC51561.3835296643142727No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT44341.1897925778839187No Hit
GAACTGTCTCTTATACACATCTGACGCAATAGGGGTCGTATGCCGTCTTCT12750.34212574127243944No Hit
GAATGACTGTCTCTTATACACATCTGACGCAATAGGGGTCGTATGCCGTCT11520.30912066976145114No Hit
GCTGTCTCTTATACACATCTGACGCAATAGGGGTCGTATGCCGTCTTCTGC11400.30590066278476935No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAATAGGGGTCGTA11320.3037539914669815No Hit
GAATGATCTGTCTCTTATACACATCTGACGCAATAGGGGTCGTATGCCGTC10510.28201894437437947No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAATAGGGGT7920.21252046046099765No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC7350.19722542732175918No Hit
GAATCTATCTCTTATACACATCTGACGCAATAGGGGTCGTATGCCGTCTTC6160.16529369146966486No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT5340.14329031046233934No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCAATAGGGGTCGTATGCCG4770.12799527732310087No Hit
GAATGCTGTCTCTTATACACATCTGACGCAATAGGGGTCGTATGCCGTCTT4330.11618858507526768No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCAATAGGGGTCGT4240.11377357984275632No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)