FastQCFastQC Report
Sat 31 Dec 2022
SRR1954373.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954373.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences646160
Sequences flagged as poor quality0
Sequence length51
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT178542.763092732450167No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCG49450.7652903305682803No Hit
GAATCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTC39470.6108394205769468No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGC31240.4834715859848954No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC25720.3980438281540176No Hit
GCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCTGC11870.18370063142255788No Hit
GAATGACTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCT11670.18060542280549707No Hit
GAACTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCT11130.17224835953943296No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTC9310.14408196112417976No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGCTGAGGTT6590.10198712393215303No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)