SRR1954371.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1954371.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1406803
Sequences flagged as poor quality	0
Sequence length	51
%GC	37

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	42705	3.0356062647008857	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCG	6632	0.47142350421487583	No Hit
GAATCTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTCTTC	5004	0.3557001229027803	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	3876	0.27551832061774106	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGC	3275	0.2327973426272193	No Hit
GCTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTCTTCTGC	1797	0.12773643502324064	RNA PCR Primer, Index 27 (95% over 23bp)
GAACTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTCTTCT	1504	0.10690906971338561	RNA PCR Primer, Index 27 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAGCGCG	30	2.1658489E-6	45.000004	1
GGTCCGC	30	2.1658489E-6	45.000004	30
TCTAGCG	30	2.1658489E-6	45.000004	20
GAACGTA	30	2.1658489E-6	45.000004	22
CGTCGAA	75	0.0	45.000004	42
CGGTCCG	30	2.1658489E-6	45.000004	29
CGTCCAT	30	2.1658489E-6	45.000004	25
GCGTCCA	30	2.1658489E-6	45.000004	24
CGTTTCG	30	2.1658489E-6	45.000004	42
CCGCAAT	30	2.1658489E-6	45.000004	33
TCCGGAC	20	7.033827E-4	45.0	16
GCGCGGC	20	7.033827E-4	45.0	27
GACCGTA	20	7.033827E-4	45.0	18
TAGCGGA	25	3.8912534E-5	45.0	3
TAGCGCA	35	1.2121927E-7	45.0	1
CGCGCCC	25	3.8912534E-5	45.0	34
ACTTCGC	20	7.033827E-4	45.0	34
ACTTCCG	55	1.8189894E-12	45.0	1
TAACGCG	20	7.033827E-4	45.0	1
CCGTAGA	20	7.033827E-4	45.0	20