FastQCFastQC Report
Sat 31 Dec 2022
SRR1954351.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954351.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1431629
Sequences flagged as poor quality0
Sequence length51
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT436443.0485551773539092No Hit
GAATCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTC42750.29861088312684364No Hit
TGAATGATACCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCC32680.2282714306569649No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGC31010.21660639732779932No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC30840.21541893884518964No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCG29860.20857358994543976No Hit
GCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTGC18230.1273374596351429No Hit
TGAACTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTC17720.12377508418731388No Hit
CTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTGCT17250.12049211073539302No Hit
CCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTGC17020.11888554925892113No Hit
TGAATCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTT14650.10233098100136279No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)