FastQCFastQC Report
Sat 31 Dec 2022
SRR1954336.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954336.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1298208
Sequences flagged as poor quality0
Sequence length51
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT27710.21344807611723238No Hit
CTGTCTCTTATACACATCTGACGCAAGTCTTCTCGTATGCCGTCTTCTGCT13800.10630037713525106TruSeq Adapter, Index 23 (96% over 26bp)
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT13600.10475979195937785No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)