FastQCFastQC Report
Sat 31 Dec 2022
SRR1954302.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954302.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences942993
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT22000.23329971696502522No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC14360.15228108798262555No Hit
CTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTTCTGCT11260.11940703695573562Illumina Single End Adapter 2 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTTCTGC10820.11474104261643511No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)