FastQCFastQC Report
Sat 31 Dec 2022
SRR1954287.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954287.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences657278
Sequences flagged as poor quality0
Sequence length51
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC18760.28541956371580973No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT15980.24312391408201706No Hit
GAGCTGTCTCTTATACACATCTGACGCATACCGCATCGTATGCCGTCTTCT12300.18713542823584542No Hit
GCTGTCTCTTATACACATCTGACGCATACCGCATCGTATGCCGTCTTCTGC11910.18120186587714787No Hit
AAGCTGTCTCTTATACACATCTGACGCATACCGCATCGTATGCCGTCTTCT9050.13768907524669927No Hit
CTGTCTCTTATACACATCTGACGCATACCGCATCGTATGCCGTCTTCTGCT8330.12673480627679612No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA7960.12110552916726257No Hit
TAAGCAGGGCATGGCCAGCACTCAGGAGGCAGAGGCAGGCAGATTTCTGAG7840.11927981767227869No Hit
AAGAGCTGTCTCTTATACACATCTGACGCATACCGCATCGTATGCCGTCTT6800.10345698471575195No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)