FastQCFastQC Report
Sat 31 Dec 2022
SRR1954285.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954285.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1412581
Sequences flagged as poor quality0
Sequence length51
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAATGATACCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCG30170.21358067254196397No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGC26430.1871043147260228No Hit
GAATCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCTTC25670.1817240922821417No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT25410.17988348986712974No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC21020.14880562601365868No Hit
GCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCTTCTGC17460.1236035314081104No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)