FastQCFastQC Report
Sat 31 Dec 2022
SRR1954273.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954273.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences984833
Sequences flagged as poor quality0
Sequence length51
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT20590.20907097954678608No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC17100.1736334992836349No Hit
CTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCTTCTGCT11960.12144190944048382No Hit
GAGCTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCTTCT10220.1037739393379385No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)