FastQCFastQC Report
Sat 31 Dec 2022
SRR1954259.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954259.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1231637
Sequences flagged as poor quality0
Sequence length51
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT35730.2901017101629782No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA18060.14663411378514934No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC15110.12268225134516096No Hit
CCTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTATGCCGTCTTCTGC13290.10790517011099862No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)