FastQCFastQC Report
Sat 31 Dec 2022
SRR1954242.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954242.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences392072
Sequences flagged as poor quality0
Sequence length51
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC10380.26474729131384034No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT8990.22929461935562856No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGAACCAGATCGTATGCCG4770.12166132751127343No Hit
GAGCTGTCTCTTATACACATCTGACGCGAACCAGATCGTATGCCGTCTTCT4260.10865351262013101No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGAACCAGATCGTATGC4090.10431757432308351No Hit
GACAGAGGGAAACTCATAATTTAAAAATGTTAGTTTTTTTACAAAAAGACA3990.10176702238364381No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)