FastQCFastQC Report
Sat 31 Dec 2022
SRR1954240.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954240.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences459621
Sequences flagged as poor quality0
Sequence length51
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC15810.3439790610089617No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT12520.2723983455934346No Hit
GAGCTGTCTCTTATACACATCTGACGCGTCAAAGGTCGTATGCCGTCTTCT6510.14163843688604305No Hit
AAGCTGTCTCTTATACACATCTGACGCGTCAAAGGTCGTATGCCGTCTTCT4930.1072622878415042No Hit
GCTGTCTCTTATACACATCTGACGCGTCAAAGGTCGTATGCCGTCTTCTGC4640.1009527414978863Illumina Single End Adapter 1 (95% over 21bp)

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)