FastQCFastQC Report
Sat 31 Dec 2022
SRR1954237.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954237.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences536178
Sequences flagged as poor quality0
Sequence length51
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC15980.2980353539309707No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT14010.2612938240658886No Hit
CTGTCTCTTATACACATCTGACGCAGCTTTCGTCGTATGCCGTCTTCTGCT7170.13372424829067958No Hit
ATAAATGGGTAAGTTTTTAATCTAATTATTTATACAAACACATAGTAAACA6700.1249585025868275No Hit
GCTGTCTCTTATACACATCTGACGCAGCTTTCGTCGTATGCCGTCTTCTGC6340.1182443143881323No Hit
GAGCTGTCTCTTATACACATCTGACGCAGCTTTCGTCGTATGCCGTCTTCT6100.11376818892233549No Hit
GCTTAAGGGAGAAATTAAAGATAAGACTTATAGCAGGTGCCATCAGGCTAT5540.1033238961688096No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)