FastQCFastQC Report
Sat 31 Dec 2022
SRR1954231.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954231.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences888862
Sequences flagged as poor quality0
Sequence length51
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT23060.2594328478436473No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCG17900.20138109177802627No Hit
GAATCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTC16370.1841680710841503No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGC14940.1680800844225538No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC13110.14749196163183936No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)