FastQCFastQC Report
Sat 31 Dec 2022
SRR1954217.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954217.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences424460
Sequences flagged as poor quality0
Sequence length51
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT12620.2973189464260472No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC12220.28789520802902513No Hit
GAGCTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGCCGTCTTCT6340.14936625359280026No Hit
GCTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGCCGTCTTCTGC4580.10790180464590304No Hit
AAGCTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGCCGTCTTCT4290.10106959430806202No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)