FastQCFastQC Report
Sat 31 Dec 2022
SRR1954202.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954202.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences501648
Sequences flagged as poor quality0
Sequence length51
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAATGATACCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCG48240.9616304659841164No Hit
GAATCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTTC31920.6363027461486939No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGC30620.6103881606225879No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT14480.28864861416770327No Hit
GCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTTCTGC11910.2374174720122476No Hit
CTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTTCTGCT9810.19555544923930723Illumina Single End Adapter 1 (95% over 21bp)
GAATGACTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCT9660.1925653047555258No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTC9040.1802060408892291No Hit
CCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTTCTGC8290.16525531847032182No Hit
GAACTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTTCT8060.1606704302618569No Hit
GAGCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTTCT7050.14053679073772846No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC6950.13854336108187415No Hit
ATTGGCATGGGCGCATAAGCCTGCGTCAGATTAAAACACTGAACTGACAAT5240.10445571396676555No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)