FastQCFastQC Report
Sat 31 Dec 2022
SRR1954187.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954187.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences340166
Sequences flagged as poor quality0
Sequence length51
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT11190.3289570386223197No Hit
ACCGATGGGATTCCTTATAAACTACTGCTAAGACAGCTAAGAAAGCTCCAA5350.157276153407454No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC4560.13405219804448415No Hit
GCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTTCTGC3930.11553182857781201No Hit
GAGCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTTCT3430.10083312265188173No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)