FastQCFastQC Report
Sat 31 Dec 2022
SRR1954181.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954181.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences546986
Sequences flagged as poor quality0
Sequence length51
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT18420.33675450559977765No Hit
GAGCTGTCTCTTATACACATCTGACGCCCGGATAATCGTATGCCGTCTTCT12330.22541710391125186No Hit
AAGCTGTCTCTTATACACATCTGACGCCCGGATAATCGTATGCCGTCTTCT10040.1835513157557963No Hit
GCTGTCTCTTATACACATCTGACGCCCGGATAATCGTATGCCGTCTTCTGC8630.15777369073431496No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC8480.1550313902001148No Hit
CTGTCTCTTATACACATCTGACGCCCGGATAATCGTATGCCGTCTTCTGCT7580.13857758699491396No Hit
AAGAGCTGTCTCTTATACACATCTGACGCCCGGATAATCGTATGCCGTCTT7110.12998504532108685No Hit
GAGAGCTGTCTCTTATACACATCTGACGCCCGGATAATCGTATGCCGTCTT6350.11609072261447276No Hit
TAGAGCTGTCTCTTATACACATCTGACGCCCGGATAATCGTATGCCGTCTT6210.11353124211588596No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA6210.11353124211588596No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)