FastQCFastQC Report
Sat 31 Dec 2022
SRR1954175.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954175.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences820242
Sequences flagged as poor quality0
Sequence length51
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT19190.23395534488602146No Hit
GAGCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCT11030.1344725093326116No Hit
CTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGCT9980.121671409169489Illumina Single End Adapter 1 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGC9540.11630713862494241No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC9510.11594139290599605No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)