FastQCFastQC Report
Sat 31 Dec 2022
SRR1954173.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954173.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences345853
Sequences flagged as poor quality0
Sequence length51
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT7790.2252402032077212No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC5180.14977461522670035No Hit
GAGCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCGTCTTCT4600.1330044845642513No Hit
GAGAGCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCGTCTT3930.11363209224728427No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)