FastQCFastQC Report
Sat 31 Dec 2022
SRR1954142.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954142.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1183356
Sequences flagged as poor quality0
Sequence length51
%GC46

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGCTTAACTTTCTCATGAATTTGCCTGAGGTTTCCAAACCCTTCACATTT22070.18650346979269128No Hit
AGGGCAAGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT16190.13681428074053792No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT14150.11957517433468881No Hit
GAGGCAAGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT12640.10681485537741811No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA12250.10351914385865284No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)