FastQCFastQC Report
Sat 31 Dec 2022
SRR1954127.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954127.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1340081
Sequences flagged as poor quality0
Sequence length51
%GC43

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAATCTATCTCTTATACACATCTGACGCCGTCTGAATCGTATGCCGTCTTC74210.5537724958416692No Hit
GAATCTGTCTCTTATACACATCTGACGCCGTCTGAATCGTATGCCGTCTTC53230.39721479522506475No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCCGTCTGAATCGTATGCCG50720.3784845841408094No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCGTCTGAATCGTATGCCG39730.29647461608663955No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCCGTCTGAATCGTATGC38170.2848335287195326No Hit
GAATATGTCTCTTATACACATCTGACGCCGTCTGAATCGTATGCCGTCTTC31060.23177703437329533No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCGTCTGAATCGTATGC26810.20006253353342074No Hit
GAATAATACCTGTCTCTTATACACATCTGACGCCGTCTGAATCGTATGCCG23760.17730271528362837No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT20930.15618458884201775No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT18630.1390214472110268No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT16140.12044048083660615No Hit
GAACTGACTCTTATACACATCTGACGCCGTCTGAATCGTATGCCGTCTTCT15700.11715709722024267No Hit
GAATAATACGGCTGTCTCTTATACACATCTGACGCCGTCTGAATCGTATGC14690.1096202393735901No Hit
GAATGAACTGTCTCTTATACACATCTGACGCCGTCTGAATCGTATGCCGTC14100.10521752043346634No Hit
GAATGAATGTCTCTTATACACATCTGACGCCGTCTGAATCGTATGCCGTCT13750.102605738011359No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)