FastQCFastQC Report
Sat 31 Dec 2022
SRR1954110.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954110.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences555507
Sequences flagged as poor quality0
Sequence length51
%GC43

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAATGAAACCTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCG67471.2145661530817793No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCG53910.9704648186251478No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGC47400.8532745761979597No Hit
GAATCTATCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCGTCTTC46730.8412135220618282No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGC37030.6665982606879841No Hit
GAATCTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCGTCTTC36700.6606577414866059No Hit
GAATAATACCTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCG35680.642296136682346No Hit
GAATATGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCGTCTTC21480.3866737952897083No Hit
GAATAATACGGCTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGC20680.37227253661970056No Hit
GAATGAATGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCGTCT13900.2502218693913848No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC13410.24140109845600505No Hit
GAATGAACTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCGTC12460.22429960378537087No Hit
GCTGTCACTTATACACATCTGACGCTGAGGGAATCGTATGCCGTCTTCTGC10460.18829645711035145No Hit
GAATGACTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCGTCT9870.17767552884122073No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCGTC9560.1720950411065927No Hit
GAACTGACTCTTATACACATCTGACGCTGAGGGAATCGTATGCCGTCTTCT7830.14095231923270093No Hit
GAACTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCGTCTTCT7210.12979134376344492No Hit
GCTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCGTCTTCTGC7150.12871124936319434No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT6690.12043052562793989No Hit
GAATAACTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCGTCT6480.11665019522706284No Hit
GAATAATCTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCGTC6160.11088969175905973No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT5580.10044877922330411No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)