FastQCFastQC Report
Sat 31 Dec 2022
SRR1954096.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954096.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences350186
Sequences flagged as poor quality0
Sequence length51
%GC45

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC6890.19675258291308048No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA5300.1513481407023696No Hit
CTGTCTATTATACACATCTGACGCGTGTTCGTTCGTATGCCGTCTTCTGCT3820.10908488631755696Illumina Single End Adapter 1 (95% over 21bp)
GAGCTGACTCTTATACACATCTGACGCGTGTTCGTTCGTATGCCGTCTTCT3600.10280251066576047No Hit
GCTGTCACTTATACACATCTGACGCGTGTTCGTTCGTATGCCGTCTTCTGC3510.10023244789911646No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)