FastQCFastQC Report
Sat 31 Dec 2022
SRR1954025.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954025.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41810
Sequences flagged as poor quality0
Sequence length51
%GC40

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1460.3491987562784023No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC1020.24396077493422627No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT730.17459937813920115No Hit
AAATAAAGGATCCTACCACATAATCACCAGAAACAACAACAACAACAAAAC440.10523798134417603No Hit
CCTGTCACTTATACACATCTGACGCAAGAGCGTTCGTATGCCGTCTTCTGC430.10284620904089929No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)