FastQCFastQC Report
Sat 31 Dec 2022
SRR1953933.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1953933.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences54648
Sequences flagged as poor quality0
Sequence length51
%GC43

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1170.21409749670619235No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC890.16286048894744548No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA790.14456155760503586No Hit
CCTGTCACTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTGC580.1061338017859757No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)