FastQCFastQC Report
Sat 31 Dec 2022
SRR1953869.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1953869.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences60512
Sequences flagged as poor quality0
Sequence length51
%GC43

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC2020.3338180856689582No Hit
CTGTCTATTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCTGCT1110.18343469063987308Illumina Single End Adapter 1 (95% over 21bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1070.17682443151771549No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1010.1669090428344791No Hit
GAGCTGACTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCT670.11072184029613961No Hit
CCTGTCACTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCTGC620.10245901639344263No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)