FastQCFastQC Report
Sat 31 Dec 2022
SRR1953860.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1953860.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences317983
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGATAGGGACCAAACTGTCTCGCGACGTTCTGAACCCAGCTCACGTACCA8880.2792602120239132No Hit
AAGATAGGGACCAAACTGTCTCGCGACGTTCTGAACCCAGCTCACGTACCA7290.22925753892503686No Hit
GTGCAAGGGGTACGCTGTCAGGCCATAAAAGCCCTCCAACTGCTTGTAGGC6450.20284103238223428No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC5530.17390866807345048No Hit
AGGATAGGGACCAAACTGTCTCGCGACGTTCTGAACCCAGCTCACGTACCA5300.16667557699625452No Hit
CACTATGACCGACTTTCGTCTCTGCTCGACTTGTCAGTCTCGCAGTCAGGC4610.14497630376466666No Hit
GTGATAGGGACCAAACTGTCTCGCGACGTTCTGAACCCAGCTCACGTACCA4290.13491287270074187No Hit
GGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAATGGACGGGA4170.13113908605177008No Hit
GTACTAGGGTCAACTCCTCTCAAATTTCGACGCCCACGGCAGATAGGGACC3560.11195567058616342No Hit
GCGTAAGGGCCATGAGGACTTGACGTCATCCCCACCTTCCTCCGGCTTATC3520.1106977417031728No Hit
GCGATTGGGGGCCTTAGCTGTAGGTCAGGGCTGTTTCCCTTTTGACGACGG3440.10818188393719162No Hit
GAGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT3180.10000534619775271No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)