FastQCFastQC Report
Sat 31 Dec 2022
SRR1953858.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1953858.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences520432
Sequences flagged as poor quality0
Sequence length51
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT12930.24844744366218832No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGTGTAGGTCGTATGCCG12250.23538137547268423No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT7410.14238171365327268No Hit
GAATCTGTCTCTTATACACATCTGACGCTGTGTAGGTCGTATGCCGTCTTC7210.1385387524210656No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGTGTAGGTCGTATGC6850.1316214222030928No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC5650.10856365480985028No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)