FastQCFastQC Report
Sat 31 Dec 2022
SRR1953853.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1953853.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1136506
Sequences flagged as poor quality0
Sequence length51
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGATAGGGACCAAACTGTCTCGCGACGTTCTGAACCCAGCTCACGTACCA24820.21838864027114682No Hit
CACTATGACCGACTTTCGTCTCTGCTCGACTTGTCAGTCTCGCAGTCAGGC14610.12855189501859207No Hit
AAGATAGGGACCAAACTGTCTCGCGACGTTCTGAACCCAGCTCACGTACCA14500.12758401627444113No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT12370.10884236422860943No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)